GSM5455041: SUCCS1 siCTL 96h ATF1 N 1; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
ATF1
Cell type
Cell type Class
Muscle
Cell type
SU-CCS-1
Tissue
Soft Tissue
Cell Type
Clear Cell Sarcoma Cell Line
Disease
Clear Cell Sarcoma
Attributes by original data submitter
Sample
source_name
Cell line
cell type
Derived from the pleural effusion of a 16 year old Caucasian girl with a heel CCS tumor
chip antibody
ATF1 N (A303-034A, Bethyl laboratories)
treatment
Transfected with CTRL siRNA
cell line
SU-CCS-1 ATCC CRL-2971
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were cross-linked with formaldehyde, flash-frozen and processed for ChIP using Protein G beads. ChIP DNA was purified with AMPure XP beads. ChIP DNA libraries were prepared using the Illumina TruSeq ChIP library preparation kit (Illumina cat. no. IP-202-1012 or IP-202-1024) according to the manufacturer's instructions and 200-500 bp fragments selected using AMPureXP beads.